GSTR 9C is the annual reconciliation statement under GST that provide the opportunity to the registered persons to reconcile their annual data filed as per the returns and the data as per their audited balance sheets. This is very crucial since to ensure congruence in the returns filed and the actual figures as per the audited financial statements. Any discrepancy, omissions, errors, mismatches may be resolved through the GSTR 9 and 9C annual return forms.
This annual exercise must be undertaken with great caution since it narrows down the possibility of any future notices or scrutiny for the taxpayer. With the due date for GSTR 9C form for FY 2024-25 fast approaching, let us understand how to compile the returns accurately –

GSTR 9C Applicability for FY 2024-25
GSTR 9C is an annual reconciliation statement that must be filed along with Form GSTR 9 primarily to reconcile the data in the audited balance sheet and the GST returns to ensure congruence in the data reported in the audited financials and the GST returns. Form GSTR 9C must be mandatorily filed by all registered persons having an aggregate turnover of more than Rs. 5 crores in FY 2024-25. This statement was earlier audited by a Chartered Accountant however, now this is self-certified by the taxpayer only.
Certain categories of registered persons have been exempted from filing the GSTR 9 and 9C annual return –
- Persons paying TDS u/s 51 of the CGST Act,
- Persons paying TCS u/s 52 of the CGST Act,
- Taxpayers under composition scheme,
- Casual Taxable Persons,
- Input Service Distributors,
- Non-resident Taxable Persons.
Difference between GSTR 9 and 9C
GSTR 9 and 9C are both annual return forms under GST however the key differences between them are as under –
| GSTR 9 Form | GSTR 9C Form |
| GSTR 9 form is applicable mandatorily for all registered persons (except as mentioned above), having an aggregate turnover of over Rs. 2 crores in FY 2024-25. | Form GSTR 9C must be mandatorily filed by all registered persons having an aggregate turnover of more than Rs. 5 crores in FY 2024-25. |
| GSTR 9 form consolidates the data from the monthly GST returns filed by the taxpayer. | GSTR 9C is an annual reconciliation statement that must be filed along with Form GSTR 9 primarily to reconcile the data in the audited balance sheet and the GST returns to ensure congruence in the data reported in the audited financials and the GST returns. |
Changes in GSTR 9C for FY 2024-25
The following changes have been incorporated in the GSTR 9C annual reconciliation statement from FY 2024-25 onwards –
- Reconciliation of turnover
As per GSTR 9C for FY 24-25, in the table for reconciliation of turnover declared in the audited financial statements and the turnover as per GSTR 9 form will now include a clause reporting the supplies on which tax is to be paid by the e-commerce operators u/s 9(5) to be reported by the supplier. This will be adjusted for computation of taxable turnover as per books of accounts and GSTR 9.
- Reconciliation of rate wise tax liability and amount payable thereon
As per GSTR 9C for FY 24-25, in the table for reconciliation of rate wise tax liability and amount payable thereon, a new clause has been inserted where e-commerce operators have to report the taxes on the supplies made by them on which tax has to be paid u/s 9(5).
- Reconciliation of taxes paid – Additional amount payable but not paid
As per GSTR 9C for FY 24-25, in the table for reconciliation of taxes paid – Additional amount payable but not paid, a new clause has been inserted where e-commerce operators have to report the taxes on the supplies made by them on which tax has to be paid u/s 9(5).
How to file GSTR 9C?
While filing GSTR 9C form, the taxpayer needs to focus on the following –
- Reconciliation of Gross Turnover
The taxpayer has to report the gross turnover as per the audited financials. This aggregate turnover must tally with the turnover reported as per GSTR 9 taking into account adjustments for credit notes, advances etc.
Any unreconciled component of the turnover will be deduced if the turnover as per GSTR 9 does not tally with the turnover as per the audited financial statements.
- Reasons for unreconciled turnover
If the unreconciled turnover as per the previous table is not nil, the taxpayer must mention the reasons for difference in the turnover as per GSTR 9 and audited financial statements.
- Reconciliation of Taxable Turnover
The taxpayer has to mention the annual turnover as per the audited financials and then adjust it for exempted supplies, zero rated supplies, inward supplies subject to RCM and thereby arrive at the taxable turnover as per the audited financials. This taxable turnover must tally with the taxable turnover as per the GSTR 9 for the financial year.
Any unreconciled component of the taxable turnover will be deduced if the taxable turnover as per GSTR 9 does not tally with the taxable turnover as per the audited financial statements.
- Reasons for unreconciled taxable turnover
If the unreconciled taxable turnover as per the previous table is not nil, the taxpayer must mention the reasons for difference in the taxable turnover as per GSTR 9 and audited financial statements.
- Reconciliation of taxes paid
As per the taxable turnover reported in the previous tables, the tax payable has to be mentioned in this table under CGST, SGST, IGST and cess on this taxabke turnover. The tax payable will now be compared with the tax payable as per GSTR 9 form.
Any unreconciled component of the tax payable will be deduced if the figures are not in congruence.
- Reasons for unreconciled payment of tax
If the unreconciled payment of tax as per the previous table is not nil, the taxpayer must mention the reasons for such difference.
- Reconciliation of taxes paid
This table pertains to the additional amount of tax payable but not paid due to the reasons specified in the table above.
- Reconciliation of ITC
The taxpayer has to reconcile ITC declared in the GSTR 9 annual return form with the ITC availed on expenses as per the audited financial statements.
- Reasons for unreconciled ITC
If the unreconciled ITC as per the previous table is not nil, the taxpayer must mention the reasons for such difference.
- Tax payable on unreconciled ITC
- Additional liability due to non-reconciliation.
GSTR 9C Penalty
If a taxpayer fails to file GSTR-9C by the due date i.e. 31st December of the year following the relevant financial year, there is no dedicated penalty under the law for this specific delay. However, the taxpayer may face a general penalty of Rs. 25,000.
FAQs on GSTR 9C
Q1. Can GSTR 9C be filed without filing GSTR 1 and 3B?
A1. No, GSTR 9 and 9C for FY 2024-25 can only be filed after all the monthly GSTR 1 and GSTR 3B forms have been filed.
Q2. Can GSTR 9C be revised after it has been filed?
A2. No, GSTR 9C cannot be revised after it has been filed.
About the Author This article is written by FCA Eshita Krishna , an experienced Chartered Accountant with advanced ICAI certifications in DISA, Anti-Money Laundering, Real Estate Laws, and Forex & Treasury Management. With strong expertise in direct and indirect tax, audit, risk advisory, financial planning, and financial management, she delivers accurate, experience-backed financial insights to readers.








